journal articles

Klaus Schliep, Alastair Alastair Potts, David A Morrison, Guido W Grimm (2017) Intertwining phylogenetic trees and networks (accepted in Methods in Ecology and Evolution) PeerJPreprint

Paradis, E., Gosselin, T., Goudet, J., Jombart, T., and Schliep, K. (2017) Linking genomics and population genetics with R. Molecular Ecology Resources 17(1) 54–66 dx.doi.org/10.1111/1755-0998.12577

Jombart, T., Archer, F., Schliep, K., Kamvar, Z., Harris, R., Paradis, E., and Goudet, J. and Lapp, H. (2017) apex: phylogenetics with multiple genes. Molecular Ecology Resources 17(1) 19–26 dx.doi.org/10.1111/1755-0998.12567 R github

Douglas C. Woodhams, Sara C. Bell, Laurent Bigler, Richard M. Caprioli, Pierre Chaurand, Brianna A. Lam, Laura K. Reinert, Urs Stalder, Victoria M. Vazquez, Klaus Schliep, Andreas Hertz, and Louise A. Rollins-Smith (2016) Life history linked to immune investment in developing amphibians. Conservation Physiology 4(1) dx.doi.org/10.1093/conphys/cow025

Legendre F., D’Haese C.A., Deleporte P., Pellens R., Whiting M.F., Schliep K., Grandcolas P. (2014) The evolution of social behaviour in Blaberid cockroaches with diverse habitats and social systems: phylogenetic analysis of behavioural sequences. Biological Journal of the Linnean Society, 111(1) 59–77 dx.doi.org/10.1111/bij.12199

Schliep K.P. (2011) phangorn: Phylogenetic analysis in R. Bioinformatics, 27(4) 592–593 dx.doi.org/10.1093/bioinformatics/btq706 R github

Schliep K.P., Lopez, P., Lapointe F.-J. and Bapteste E. (2011). Harvesting Evolutionary Signals in a Forest of Prokaryotic Gene Trees, Molecular Biology and Evolution, 28(4), 1393–1405 dx.doi.org/10.1093/molbev/msq323

Boucher, Y., Cordero, O., Takemura, A., Hunt, D., Schliep, K.P., Bapteste, E., Lopez, P., Tarr, C. and Polz, M. (2011) Local Mobile Gene Pools Rapidly Cross Species Boundaries to Create Endemicity Within Global V. cholerae Populations. mBio, 2:2 e00335-10 dx.doi.org/10.1128/mBio.00335-10

Leigh, J.W., Schliep, K.P., Lopez P. and Bapteste E. (2011) Let Them Fall Where They May: Congruence Analysis in Massive Phylogenetically Messy Datasets. Molecular Biology and Evolution, 28 (10), 2773–2785 dx.doi.org/10.1093/molbev/msr110

Beauregard-Racine J., Bicep C., Schliep K., Lopez P., Lapointe F.-J., Babteste E. (2011) Of Woods and Webs: Possible alternatives to the tree of life to study genomic fluidity in E. coli. Biology Direct 20, 6:39. dx.doi.org/10.1186/1745-6150-6-39

technical reports

Hechenbichler K., Schliep K. (2004) Weighted k-Nearest-Neighbor Techniques and Ordinal Classification, Sonderforschungsbereich 386, paper 399 url R github

dissertation

Klaus Schliep (2009) Some applications of statistical phylogenetics : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Biomathematics at Massey University url

in the press

Dalmeet Singh Chawla. The unsung heroes of scientific software. Nature, 529(7584):115–116, January 2016. dx.doi.org/10.1038/529115a